/EXTERNAL Roadmap/K012820_1_lane_gembs

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SAMPLE K012820_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2033647172 100.00 % 1016823586 100.00 % 1016823586 100.00 %
General Reads 1908962632 93.87 % 958174848 94.23 % 950787784 93.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6190736 0.30 % 3104505 0.31 % 3086231 0.30 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 118493804 5.83 % 55544233 5.46 % 62949571 6.19 %
Bisulfite_reads C2T 971815116 47.79 % 487743707 47.97 % 484071409 47.61 %
Bisulfite_reads G2A 943338252 46.39 % 473535646 46.57 % 469802606 46.20 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 539104759
Average Unique 53.02 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 78936815310 38.43 % 30850277874 30.04 % 48086537436 46.82 %
Base Counts Overall C 21586626176 10.51 % 1784276348 1.74 % 19802349828 19.28 %
Base Counts Overall G 23987970929 11.68 % 21195264899 20.64 % 2792706030 2.72 %
Base Counts Overall T 77408224410 37.69 % 47085007899 45.85 % 30323216511 29.53 %
Base Counts Overall N 3478727547 1.69 % 1784355166 1.74 % 1694372381 1.65 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9794242920743939
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 658873931



Mapping Quality

Mapping Quality Histogram
K012820_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012820_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012820_1969463