/EXTERNAL Roadmap/mapping_coverage/K012820_1_lane_gembs
BACK
SAMPLE K012820_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1902964011 |
100% |
169035918810 |
100% |
| Mapped |
1847963355 |
97.11 % |
163535853210 |
96.75 % |
| Passed |
1080692299 |
56.79 % |
86808747610 |
51.36 % |
| NotPassed |
767271056 |
40.32 % |
76727105600 |
45.39 % |
| |
|
|
|
|
| LowMAPQ |
593237022 |
31.17 % |
59323702200 |
35.10 % |
| MateUnmapped |
55000656 |
2.89 % |
5500065600 |
3.25 % |
| Duplicate |
6817344 |
0.36 % |
681734400 |
0.40 % |
| BadOrientation |
302 |
0.00 % |
30200 |
0.00 % |
| LargeInsertSize |
53560 |
0.00 % |
5356000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
167162828 |
8.78 % |
16716282800 |
9.89 % |
| Unmapped |
55000656 |
2.89 % |
5500065600 |
3.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
108046448500 |
100% |
| Passed |
79612364073 |
73.68 % |
| Trimmed |
4573733782 |
4.23 % |
| Clipped |
1094450219 |
1.01 % |
| Overlapping |
20143250671 |
18.64 % |
| LowQuality |
2622649755 |
2.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |