/EXTERNAL Roadmap/methylation/K012820_1_lane_gembs

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SAMPLE K012820_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26677231 22020548 82.54 %
NonRefCpG 262154 180925 69.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012820_1_lane_gembs_coverage_refCpG.png ./IMG//K012820_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012820_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012820_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012820_1_lane_gembs_quality_refcpg.png ./IMG//K012820_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012820_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6093549 11.61 % 3620949 7.85 % 47175 9.58 % 17489 4.56 %
Intermediate (0.3-0.7) 8955037 17.06 % 7201413 15.62 % 91794 18.65 % 57782 15.08 %
Methylated (0.7-1) 37456112 71.34 % 35294486 76.53 % 353255 71.77 % 307999 80.36 %
Median Methylation 0.850 0.870 0.850 0.880