/EXTERNAL Roadmap/K012817_1_lane_gembs

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SAMPLE K012817_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1306429614 100.00 % 653214807 100.00 % 653214807 100.00 %
General Reads 1228359308 94.02 % 616546289 94.39 % 611813019 93.66 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9507194 0.73 % 4765587 0.73 % 4741607 0.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 68563112 5.25 % 31902931 4.88 % 36660181 5.61 %
Bisulfite_reads C2T 628995780 48.15 % 315681604 48.33 % 313314176 47.96 %
Bisulfite_reads G2A 608870722 46.61 % 305630272 46.79 % 303240450 46.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 370952355
Average Unique 56.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 50797816133 38.50 % 20778426284 31.49 % 30019389849 45.50 %
Base Counts Overall C 13902166332 10.54 % 1051246618 1.59 % 12850919714 19.48 %
Base Counts Overall G 15094907509 11.44 % 13570762498 20.57 % 1524145011 2.31 %
Base Counts Overall T 49951720394 37.86 % 29472544635 44.67 % 20479175759 31.04 %
Base Counts Overall N 2202780646 1.67 % 1101715472 1.67 % 1101065174 1.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9854106533622681
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 450460124



Mapping Quality

Mapping Quality Histogram
K012817_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012817_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012817_1969460