/EXTERNAL Roadmap/mapping_coverage/K012817_1_lane_gembs
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SAMPLE K012817_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1223248725 |
100% |
108774096809 |
100% |
| Mapped |
1191529581 |
97.41 % |
105602182409 |
97.08 % |
| Passed |
734696737 |
60.06 % |
59918898009 |
55.09 % |
| NotPassed |
456832844 |
37.35 % |
45683284400 |
42.00 % |
| |
|
|
|
|
| LowMAPQ |
356293246 |
29.13 % |
35629324600 |
32.76 % |
| MateUnmapped |
31719144 |
2.59 % |
3171914400 |
2.92 % |
| Duplicate |
5515042 |
0.45 % |
551504200 |
0.51 % |
| BadOrientation |
176 |
0.00 % |
17600 |
0.00 % |
| LargeInsertSize |
31692 |
0.00 % |
3169200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
94992688 |
7.77 % |
9499268800 |
8.73 % |
| Unmapped |
31719144 |
2.59 % |
3171914400 |
2.92 % |
Base Level Counts
| Bases |
# |
% |
| Total |
73453303600 |
100% |
| Passed |
55252362999 |
75.22 % |
| Trimmed |
3153292340 |
4.29 % |
| Clipped |
477634938 |
0.65 % |
| Overlapping |
13056770653 |
17.78 % |
| LowQuality |
1513242670 |
2.06 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |