/EXTERNAL Roadmap/methylation/K012817_1_lane_gembs

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SAMPLE K012817_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26485033 16919834 63.88 %
NonRefCpG 286897 147058 51.26 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012817_1_lane_gembs_coverage_refCpG.png ./IMG//K012817_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012817_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012817_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012817_1_lane_gembs_quality_refcpg.png ./IMG//K012817_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012817_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5117704 10.00 % 1529405 4.09 % 68985 12.88 % 15032 4.38 %
Intermediate (0.3-0.7) 12203790 23.85 % 7416613 19.82 % 131706 24.59 % 67601 19.69 %
Methylated (0.7-1) 33840163 66.14 % 28481094 76.10 % 334927 62.53 % 260765 75.94 %
Median Methylation 0.810 0.850 0.790 0.850