/EXTERNAL Roadmap/methylation/K012797_1_lane_gembs

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SAMPLE K012797_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25567404 1824230 7.13 %
NonRefCpG 463417 11349 2.45 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012797_1_lane_gembs_coverage_refCpG.png ./IMG//K012797_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012797_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012797_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012797_1_lane_gembs_quality_refcpg.png ./IMG//K012797_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012797_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6606019 14.54 % 141847 2.78 % 246083 29.87 % 2606 5.62 %
Intermediate (0.3-0.7) 14820180 32.62 % 985435 19.30 % 273983 33.26 % 9598 20.71 %
Methylated (0.7-1) 24001646 52.83 % 3979021 77.92 % 303817 36.88 % 34146 73.67 %
Median Methylation 0.720 0.860 0.550 0.850