/EXTERNAL Roadmap/mapping_coverage/K012821_1_lane_gembs
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SAMPLE K012821_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4744068133 |
100% |
288155434871 |
100% |
| Mapped |
4744068133 |
100.00 % |
288155434871 |
100.00 % |
| Passed |
3716471603 |
78.34 % |
254587952571 |
88.35 % |
| NotPassed |
1027596530 |
21.66 % |
33567482300 |
11.65 % |
| |
|
|
|
|
| LowMAPQ |
335674823 |
7.08 % |
33567482300 |
11.65 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
691921707 |
14.58 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
186767922500 |
100% |
| Passed |
174113270963 |
93.22 % |
| Trimmed |
9300778392 |
4.98 % |
| Clipped |
216439857 |
0.12 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
3137433288 |
1.68 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |