/EXTERNAL Roadmap/methylation/K012821_1_lane_gembs

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SAMPLE K012821_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26978387 23886655 88.54 %
NonRefCpG 215059 155975 72.53 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012821_1_lane_gembs_coverage_refCpG.png ./IMG//K012821_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012821_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012821_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012821_1_lane_gembs_quality_refcpg.png ./IMG//K012821_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012821_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5671149 10.64 % 5022905 10.38 % 23559 5.70 % 13215 3.92 %
Intermediate (0.3-0.7) 8834670 16.57 % 7911453 16.36 % 82267 19.91 % 61870 18.34 %
Methylated (0.7-1) 38807917 72.79 % 35437910 73.26 % 307326 74.39 % 262310 77.75 %
Median Methylation 0.850 0.860 0.840 0.850