/EXTERNAL Roadmap/K012808_1_lane_gembs

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SAMPLE K012808_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1817752526 100.00 % 908876263 100.00 % 908876263 100.00 %
General Reads 1704793538 93.79 % 847161500 93.21 % 857632038 94.36 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4346049 0.24 % 2156217 0.24 % 2189832 0.24 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 108612939 5.98 % 59558546 6.55 % 49054393 5.40 %
Bisulfite_reads C2T 872541272 48.00 % 433650744 47.71 % 438890528 48.29 %
Bisulfite_reads G2A 836598315 46.02 % 415666973 45.73 % 420931342 46.31 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 519652132
Average Unique 57.18 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 69885856582 38.07 % 26834782690 29.23 % 43051073892 46.90 %
Base Counts Overall C 20678666354 11.26 % 2216917631 2.42 % 18461748723 20.11 %
Base Counts Overall G 22302442614 12.15 % 19547435240 21.29 % 2755007374 3.00 %
Base Counts Overall T 68062591170 37.07 % 41900365993 45.64 % 26162225177 28.50 %
Base Counts Overall N 2663448406 1.45 % 1297001009 1.41 % 1366447397 1.49 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.985917448488492
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 622734459



Mapping Quality

Mapping Quality Histogram
K012808_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012808_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012808_1969451