/EXTERNAL Roadmap/mapping_coverage/K012808_1_lane_gembs
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SAMPLE K012808_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1686522567 |
100% |
139700967067 |
100% |
| Mapped |
1630887422 |
96.70 % |
134137452567 |
96.02 % |
| Passed |
1017657802 |
60.34 % |
72814490567 |
52.12 % |
| NotPassed |
613229620 |
36.36 % |
61322962000 |
43.90 % |
| |
|
|
|
|
| LowMAPQ |
551213960 |
32.68 % |
55121396000 |
39.46 % |
| MateUnmapped |
55635145 |
3.30 % |
5563514500 |
3.98 % |
| Duplicate |
20134157 |
1.19 % |
2013415700 |
1.44 % |
| BadOrientation |
450 |
0.00 % |
45000 |
0.00 % |
| LargeInsertSize |
53796 |
0.00 % |
5379600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41827257 |
2.48 % |
4182725700 |
2.99 % |
| Unmapped |
55635145 |
3.30 % |
5563514500 |
3.98 % |
Base Level Counts
| Bases |
# |
% |
| Total |
101739541800 |
100% |
| Passed |
67161438625 |
66.01 % |
| Trimmed |
4050284814 |
3.98 % |
| Clipped |
612882908 |
0.60 % |
| Overlapping |
28312168325 |
27.83 % |
| LowQuality |
1602767128 |
1.58 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |