/EXTERNAL Roadmap/methylation/K012808_1_lane_gembs

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SAMPLE K012808_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26551179 22183572 83.55 %
NonRefCpG 279889 187203 66.88 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012808_1_lane_gembs_coverage_refCpG.png ./IMG//K012808_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012808_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012808_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012808_1_lane_gembs_quality_refcpg.png ./IMG//K012808_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012808_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6015160 11.51 % 4304615 9.28 % 55389 10.53 % 21026 5.27 %
Intermediate (0.3-0.7) 10157379 19.43 % 8435817 18.19 % 117040 22.26 % 76635 19.20 %
Methylated (0.7-1) 36108329 69.07 % 33640858 72.53 % 353401 67.21 % 301539 75.54 %
Median Methylation 0.830 0.840 0.820 0.850