/EXTERNAL Roadmap/K012811_1_lane_gembs

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SAMPLE K012811_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 330790034 100.00 % 165395017 100.00 % 165395017 100.00 %
General Reads 308323421 93.21 % 154129277 93.19 % 154194144 93.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1227105 0.37 % 614043 0.37 % 613062 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21239508 6.42 % 10651697 6.44 % 10587811 6.40 %
Bisulfite_reads C2T 157444131 47.60 % 78704803 47.59 % 78739328 47.61 %
Bisulfite_reads G2A 152106395 45.98 % 76038517 45.97 % 76067878 45.99 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 88611488
Average Unique 53.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12786140050 38.27 % 4988239217 29.86 % 7797900833 46.68 %
Base Counts Overall C 3633124253 10.87 % 355869552 2.13 % 3277254701 19.62 %
Base Counts Overall G 4100989378 12.27 % 3539400260 21.19 % 561589118 3.36 %
Base Counts Overall T 12490407724 37.39 % 7621905848 45.63 % 4868501876 29.14 %
Base Counts Overall N 399132029 1.19 % 199481840 1.19 % 199650189 1.20 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9741018815945031
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 108261640



Mapping Quality

Mapping Quality Histogram
K012811_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012811_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012811_1969454