/EXTERNAL Roadmap/mapping_coverage/K012811_1_lane_gembs
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SAMPLE K012811_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
307909629 |
100% |
27259318217 |
100% |
| Mapped |
299245322 |
97.19 % |
26392887517 |
96.82 % |
| Passed |
178881571 |
58.10 % |
14356512417 |
52.67 % |
| NotPassed |
120363751 |
39.09 % |
12036375100 |
44.16 % |
| |
|
|
|
|
| LowMAPQ |
101037408 |
32.81 % |
10103740800 |
37.07 % |
| MateUnmapped |
8664307 |
2.81 % |
866430700 |
3.18 % |
| Duplicate |
454641 |
0.15 % |
45464100 |
0.17 % |
| BadOrientation |
58 |
0.00 % |
5800 |
0.00 % |
| LargeInsertSize |
10186 |
0.00 % |
1018600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18861458 |
6.13 % |
1886145800 |
6.92 % |
| Unmapped |
8664307 |
2.81 % |
866430700 |
3.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
17840748400 |
100% |
| Passed |
13251369340 |
74.28 % |
| Trimmed |
756773578 |
4.24 % |
| Clipped |
166103872 |
0.93 % |
| Overlapping |
3318132111 |
18.60 % |
| LowQuality |
348369499 |
1.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |