/EXTERNAL Roadmap/methylation/K012811_1_lane_gembs

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SAMPLE K012811_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25282391 921702 3.65 %
NonRefCpG 488643 4809 0.98 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012811_1_lane_gembs_coverage_refCpG.png ./IMG//K012811_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012811_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012811_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012811_1_lane_gembs_quality_refcpg.png ./IMG//K012811_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012811_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5818159 13.46 % 59372 2.20 % 270611 32.07 % 1261 5.50 %
Intermediate (0.3-0.7) 14581873 33.72 % 521750 19.29 % 288173 34.15 % 4865 21.23 %
Methylated (0.7-1) 22839850 52.82 % 2123460 78.51 % 285098 33.78 % 16786 73.26 %
Median Methylation 0.720 0.860 0.510 0.840