/EXTERNAL Roadmap/K012799_1_lane_gembs

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SAMPLE K012799_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1765633114 100.00 % 882816557 100.00 % 882816557 100.00 %
General Reads 1615410533 91.49 % 814549741 92.27 % 800860792 90.72 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24464500 1.39 % 12353416 1.40 % 12111084 1.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 125758081 7.12 % 55913400 6.33 % 69844681 7.91 %
Bisulfite_reads C2T 835885580 47.34 % 421436497 47.74 % 414449083 46.95 %
Bisulfite_reads G2A 803989453 45.54 % 405466660 45.93 % 398522793 45.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 497653120
Average Unique 56.37 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 68261642039 38.28 % 26988826221 30.27 % 41272815818 46.29 %
Base Counts Overall C 18909780217 10.60 % 1561583501 1.75 % 17348196716 19.46 %
Base Counts Overall G 21095332054 11.83 % 18671243394 20.94 % 2424088660 2.72 %
Base Counts Overall T 67127717838 37.64 % 40517733274 45.44 % 26609984564 29.84 %
Base Counts Overall N 2934472366 1.65 % 1425085867 1.60 % 1509386499 1.69 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9812602381801452
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 599095847



Mapping Quality

Mapping Quality Histogram
K012799_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012799_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012799_1969442