/EXTERNAL Roadmap/mapping_coverage/K012799_1_lane_gembs
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SAMPLE K012799_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1609734998 |
100% |
141618244796 |
100% |
| Mapped |
1551827372 |
96.40 % |
135827482196 |
95.91 % |
| Passed |
981202782 |
60.95 % |
78765023196 |
55.62 % |
| NotPassed |
570624590 |
35.45 % |
57062459000 |
40.29 % |
| |
|
|
|
|
| LowMAPQ |
465849496 |
28.94 % |
46584949600 |
32.89 % |
| MateUnmapped |
57907626 |
3.60 % |
5790762600 |
4.09 % |
| Duplicate |
6155791 |
0.38 % |
615579100 |
0.43 % |
| BadOrientation |
272 |
0.00 % |
27200 |
0.00 % |
| LargeInsertSize |
38204 |
0.00 % |
3820400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
98580827 |
6.12 % |
9858082700 |
6.96 % |
| Unmapped |
57907626 |
3.60 % |
5790762600 |
4.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
98102643000 |
100% |
| Passed |
71771525668 |
73.16 % |
| Trimmed |
4158341592 |
4.24 % |
| Clipped |
643895421 |
0.66 % |
| Overlapping |
18693724383 |
19.06 % |
| LowQuality |
2835155936 |
2.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |