/EXTERNAL Roadmap/methylation/K012799_1_lane_gembs

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SAMPLE K012799_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26659627 21157697 79.36 %
NonRefCpG 285344 189790 66.51 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012799_1_lane_gembs_coverage_refCpG.png ./IMG//K012799_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012799_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012799_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012799_1_lane_gembs_quality_refcpg.png ./IMG//K012799_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012799_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5795862 11.08 % 3029196 6.77 % 49775 9.28 % 15742 3.86 %
Intermediate (0.3-0.7) 9123214 17.44 % 6933813 15.49 % 102226 19.06 % 60994 14.97 %
Methylated (0.7-1) 37392771 71.48 % 34814172 77.75 % 384318 71.66 % 330766 81.17 %
Median Methylation 0.850 0.870 0.850 0.880