/EXTERNAL Roadmap/K012818_1_lane_gembs

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SAMPLE K012818_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 375643288 100.00 % 187821644 100.00 % 187821644 100.00 %
General Reads 351475145 93.57 % 175850783 93.63 % 175624362 93.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1080263 0.29 % 540767 0.29 % 539496 0.29 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23087880 6.15 % 11430094 6.09 % 11657786 6.21 %
Bisulfite_reads C2T 178980185 47.65 % 89544253 47.68 % 89435932 47.62 %
Bisulfite_reads G2A 173575223 46.21 % 86847297 46.24 % 86727926 46.18 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 99622586
Average Unique 53.04 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14632034573 38.57 % 5664021491 29.86 % 8968013082 47.27 %
Base Counts Overall C 4039688564 10.65 % 317543304 1.67 % 3722145260 19.62 %
Base Counts Overall G 4433717343 11.69 % 3952425117 20.84 % 481292226 2.54 %
Base Counts Overall T 14375777195 37.89 % 8805662760 46.42 % 5570114435 29.36 %
Base Counts Overall N 458754413 1.21 % 230333372 1.21 % 228421041 1.20 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.98242336365043
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 122104486



Mapping Quality

Mapping Quality Histogram
K012818_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012818_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012818_1969461