/EXTERNAL Roadmap/mapping_coverage/K012818_1_lane_gembs
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SAMPLE K012818_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
351024250 |
100% |
31064798357 |
100% |
| Mapped |
340449550 |
96.99 % |
30007328357 |
96.60 % |
| Passed |
201206039 |
57.32 % |
16082977257 |
51.77 % |
| NotPassed |
139243511 |
39.67 % |
13924351100 |
44.82 % |
| |
|
|
|
|
| LowMAPQ |
108268402 |
30.84 % |
10826840200 |
34.85 % |
| MateUnmapped |
10574700 |
3.01 % |
1057470000 |
3.40 % |
| Duplicate |
491734 |
0.14 % |
49173400 |
0.16 % |
| BadOrientation |
54 |
0.00 % |
5400 |
0.00 % |
| LargeInsertSize |
11154 |
0.00 % |
1115400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
30472167 |
8.68 % |
3047216700 |
9.81 % |
| Unmapped |
10574700 |
3.01 % |
1057470000 |
3.40 % |
Base Level Counts
| Bases |
# |
% |
| Total |
20086662000 |
100% |
| Passed |
14741871823 |
73.39 % |
| Trimmed |
844623638 |
4.20 % |
| Clipped |
172608978 |
0.86 % |
| Overlapping |
3831075765 |
19.07 % |
| LowQuality |
496481796 |
2.47 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |