/EXTERNAL Roadmap/methylation/K012818_1_lane_gembs

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SAMPLE K012818_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25306572 1304798 5.16 %
NonRefCpG 478850 7351 1.54 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012818_1_lane_gembs_coverage_refCpG.png ./IMG//K012818_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012818_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012818_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012818_1_lane_gembs_quality_refcpg.png ./IMG//K012818_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012818_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6671490 15.14 % 106878 2.93 % 286467 33.99 % 2092 6.67 %
Intermediate (0.3-0.7) 14530122 32.98 % 695145 19.06 % 281297 33.38 % 6512 20.74 %
Methylated (0.7-1) 22855353 51.88 % 2846023 78.01 % 275072 32.64 % 22791 72.59 %
Median Methylation 0.710 0.860 0.490 0.840