/EXTERNAL Roadmap/mapping_coverage/K012815_1_lane_gembs
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SAMPLE K012815_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1254790139 |
100% |
111378796097 |
100% |
| Mapped |
1218040661 |
97.07 % |
107703848297 |
96.70 % |
| Passed |
661193314 |
52.69 % |
52019113597 |
46.70 % |
| NotPassed |
556847347 |
44.38 % |
55684734700 |
50.00 % |
| |
|
|
|
|
| LowMAPQ |
430926874 |
34.34 % |
43092687400 |
38.69 % |
| MateUnmapped |
36749478 |
2.93 % |
3674947800 |
3.30 % |
| Duplicate |
4248023 |
0.34 % |
424802300 |
0.38 % |
| BadOrientation |
246 |
0.00 % |
24600 |
0.00 % |
| LargeInsertSize |
48402 |
0.00 % |
4840200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
121623802 |
9.69 % |
12162380200 |
10.92 % |
| Unmapped |
36749478 |
2.93 % |
3674947800 |
3.30 % |
Base Level Counts
| Bases |
# |
% |
| Total |
66103072300 |
100% |
| Passed |
47875938976 |
72.43 % |
| Trimmed |
2763850544 |
4.18 % |
| Clipped |
710662259 |
1.08 % |
| Overlapping |
13373296444 |
20.23 % |
| LowQuality |
1379324077 |
2.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |