/EXTERNAL Roadmap/methylation/K012815_1_lane_gembs

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SAMPLE K012815_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26285974 15780642 60.03 %
NonRefCpG 281702 135422 48.07 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012815_1_lane_gembs_coverage_refCpG.png ./IMG//K012815_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012815_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012815_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012815_1_lane_gembs_quality_refcpg.png ./IMG//K012815_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012815_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5437429 10.67 % 1523019 4.30 % 66955 12.73 % 11455 3.63 %
Intermediate (0.3-0.7) 12355136 24.24 % 6959728 19.67 % 131319 24.97 % 60003 19.00 %
Methylated (0.7-1) 33183364 65.10 % 26903857 76.03 % 327557 62.29 % 244313 77.37 %
Median Methylation 0.800 0.850 0.790 0.860