/EXTERNAL Roadmap/mapping_coverage/K012806_1_lane_gembs
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SAMPLE K012806_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
333220987 |
100% |
29744089130 |
100% |
| Mapped |
320970521 |
96.32 % |
28519042530 |
95.88 % |
| Passed |
196908460 |
59.09 % |
16112836430 |
54.17 % |
| NotPassed |
124062061 |
37.23 % |
12406206100 |
41.71 % |
| |
|
|
|
|
| LowMAPQ |
95005880 |
28.51 % |
9500588000 |
31.94 % |
| MateUnmapped |
12250466 |
3.68 % |
1225046600 |
4.12 % |
| Duplicate |
508108 |
0.15 % |
50810800 |
0.17 % |
| BadOrientation |
40 |
0.00 % |
4000 |
0.00 % |
| LargeInsertSize |
7938 |
0.00 % |
793800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28540095 |
8.56 % |
2854009500 |
9.60 % |
| Unmapped |
12250466 |
3.68 % |
1225046600 |
4.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
19647362600 |
100% |
| Passed |
14751035437 |
75.08 % |
| Trimmed |
838372137 |
4.27 % |
| Clipped |
152127729 |
0.77 % |
| Overlapping |
3382398441 |
17.22 % |
| LowQuality |
523428856 |
2.66 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |