/CEMT/mapping_coverage/A34002_3_lane_gembs
BACK
SAMPLE A34002_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1027476795 |
100% |
86152935489 |
100% |
| Mapped |
1018421250 |
99.12 % |
85247380989 |
98.95 % |
| Passed |
860182367 |
83.72 % |
69423492689 |
80.58 % |
| NotPassed |
158238883 |
15.40 % |
15823888300 |
18.37 % |
| |
|
|
|
|
| LowMAPQ |
127828442 |
12.44 % |
12782844200 |
14.84 % |
| MateUnmapped |
9055545 |
0.88 % |
905554500 |
1.05 % |
| Duplicate |
6214899 |
0.60 % |
621489900 |
0.72 % |
| BadOrientation |
28 |
0.00 % |
2800 |
0.00 % |
| LargeInsertSize |
4516 |
0.00 % |
451600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24190998 |
2.35 % |
2419099800 |
2.81 % |
| Unmapped |
9055545 |
0.88 % |
905554500 |
1.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86015594000 |
100% |
| Passed |
64744306287 |
75.27 % |
| Trimmed |
3645617714 |
4.24 % |
| Clipped |
99783712 |
0.12 % |
| Overlapping |
16492317599 |
19.17 % |
| LowQuality |
1033568688 |
1.20 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |