/CEMT/methylation/A34002_3_lane_gembs

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SAMPLE A34002_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26628595 17714667 66.52 %
NonRefCpG 264146 145682 55.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34002_3_lane_gembs_coverage_refCpG.png ./IMG//A34002_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34002_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34002_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34002_3_lane_gembs_quality_refcpg.png ./IMG//A34002_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34002_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11736832 22.67 % 6975710 17.61 % 133051 26.52 % 68753 20.15 %
Intermediate (0.3-0.7) 12391741 23.93 % 8296416 20.94 % 126622 25.24 % 74450 21.83 %
Methylated (0.7-1) 27649230 53.40 % 24339038 61.44 % 242090 48.25 % 197919 58.02 %
Median Methylation 0.730 0.800 0.670 0.780