/EXTERNAL BLUEPRINT/mapping_coverage/K006324_15_lane_gembs
BACK
SAMPLE K006324_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1172737491 |
100% |
100028182946 |
100% |
| Mapped |
1161606706 |
99.05 % |
98903973661 |
98.88 % |
| Passed |
884358408 |
75.41 % |
70901895563 |
70.88 % |
| NotPassed |
277248298 |
23.64 % |
28002078098 |
27.99 % |
| |
|
|
|
|
| LowMAPQ |
234987788 |
20.04 % |
23733766588 |
23.73 % |
| MateUnmapped |
11130785 |
0.95 % |
1124209285 |
1.12 % |
| Duplicate |
21045669 |
1.79 % |
2125612569 |
2.13 % |
| BadOrientation |
162 |
0.00 % |
16362 |
0.00 % |
| LargeInsertSize |
31234 |
0.00 % |
3154634 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21183445 |
1.81 % |
2139527945 |
2.14 % |
| Unmapped |
11130785 |
0.95 % |
1124209285 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
89313456044 |
100% |
| Passed |
66718939244 |
74.70 % |
| Trimmed |
3677133353 |
4.12 % |
| Clipped |
105333231 |
0.12 % |
| Overlapping |
18306227250 |
20.50 % |
| LowQuality |
505822966 |
0.57 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |