/EXTERNAL BLUEPRINT/K006272_11_lane_gembs

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SAMPLE K006272_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1255044334 100.00 % 627522167 100.00 % 627522167 100.00 %
General Reads 1223388723 97.48 % 613474236 97.76 % 609914487 97.19 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13992014 1.11 % 7010323 1.12 % 6981691 1.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17663597 1.41 % 7037608 1.12 % 10625989 1.69 %
Bisulfite_reads C2T 650081932 51.80 % 326008198 51.95 % 324073734 51.64 %
Bisulfite_reads G2A 587298805 46.80 % 294476361 46.93 % 292822444 46.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 499411238
Average Unique 79.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46315491980 36.18 % 18084800385 28.25 % 28230691595 44.11 %
Base Counts Overall C 16915573295 13.21 % 780258434 1.22 % 16135314861 25.21 %
Base Counts Overall G 17159330914 13.40 % 16420693573 25.65 % 738637341 1.15 %
Base Counts Overall T 46084199201 36.00 % 28089782916 43.89 % 17994416285 28.11 %
Base Counts Overall N 1539926678 1.20 % 631725726 0.99 % 908200952 1.42 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.999265158915078
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 600308893



Mapping Quality

Mapping Quality Histogram
K006272_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006272_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C002CT.Bisulfite-Seq.DNA_Methylation.EGAX00001123393_11