/EXTERNAL BLUEPRINT/methylation/K006272_11_lane_gembs

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SAMPLE K006272_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26829894 21522129 80.22 %
NonRefCpG 331892 166829 50.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006272_11_lane_gembs_coverage_refCpG.png ./IMG//K006272_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006272_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006272_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006272_11_lane_gembs_quality_refcpg.png ./IMG//K006272_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006272_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5966627 12.28 % 4631134 11.02 % 107498 18.71 % 32183 8.76 %
Intermediate (0.3-0.7) 7365658 15.16 % 5256471 12.51 % 124325 21.64 % 60806 16.54 %
Methylated (0.7-1) 35246702 72.56 % 32122173 76.46 % 342687 59.65 % 274552 74.70 %
Median Methylation 0.850 0.870 0.780 0.860