/EXTERNAL BLUEPRINT/K006266_8_lane_gembs/S000RD.Bisulfite-Seq.DNA_Methylation.EGAX00001097772_8

BACK

SAMPLE K006266_8_lane_gembs LANE S000RD.Bisulfite-Seq.DNA_Methylation.EGAX00001097772_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2358704474 100.00 % 1179352237 100.00 % 1179352237 100.00 %
General Reads 2230013226 94.54 % 1120226361 94.99 % 1109786865 94.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16856852 0.71 % 8464719 0.72 % 8392133 0.71 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 111834396 4.74 % 50661157 4.30 % 61173239 5.19 %
Bisulfite_reads C2T 1172448182 49.71 % 588974118 49.94 % 583474064 49.47 %
Bisulfite_reads G2A 1074421896 45.55 % 539716962 45.76 % 534704934 45.34 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 913531990
Average Unique 77.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 88220241072 36.68 % 34813205125 28.95 % 53407035947 44.41 %
Base Counts Overall C 30886436017 12.84 % 2170390345 1.80 % 28716045672 23.88 %
Base Counts Overall G 31495141312 13.10 % 29385715416 24.44 % 2109425896 1.75 %
Base Counts Overall T 87257166403 36.28 % 52678094551 43.81 % 34579071852 28.75 %
Base Counts Overall N 2651754330 1.10 % 1207964130 1.00 % 1443790200 1.20 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989371929476836
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1087863191



Mapping Quality

Mapping Quality Histogram
S000RD.Bisulfite-Seq.DNA_Methylation.EGAX00001097772_8.mapq.png



Read Length

Read Length Reads
101 1140793630
100 38558607
101 1140793630
100 38558607



Insert Size Plot

Insert Size Histogram
S000RD.Bisulfite-Seq.DNA_Methylation.EGAX00001097772_8.isize.png