/EXTERNAL BLUEPRINT/mapping_coverage/K006266_8_lane_gembs
BACK
SAMPLE K006266_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2174852223 |
100% |
195919197764 |
100% |
| Mapped |
2146424922 |
98.69 % |
193048927274 |
98.53 % |
| Passed |
1717075784 |
78.95 % |
149697434220 |
76.41 % |
| NotPassed |
429349138 |
19.74 % |
43351493054 |
22.13 % |
| |
|
|
|
|
| LowMAPQ |
342713348 |
15.76 % |
34602453844 |
17.66 % |
| MateUnmapped |
28427301 |
1.31 % |
2870270490 |
1.47 % |
| Duplicate |
55213883 |
2.54 % |
5576362895 |
2.85 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
21382 |
0.00 % |
2158882 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31400495 |
1.44 % |
3170514403 |
1.62 % |
| Unmapped |
28427301 |
1.31 % |
2870270490 |
1.47 % |
Base Level Counts
| Bases |
# |
% |
| Total |
173356456560 |
100% |
| Passed |
139878689812 |
80.69 % |
| Trimmed |
7399619613 |
4.27 % |
| Clipped |
297195278 |
0.17 % |
| Overlapping |
23361827062 |
13.48 % |
| LowQuality |
2419124795 |
1.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |