/EXTERNAL BLUEPRINT/K006390_K006403_24_lane_gembs/UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345061_14

BACK

SAMPLE K006390_K006403_24_lane_gembs LANE UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345061_14

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1141401488 100.00 % 570700744 100.00 % 570700744 100.00 %
General Reads 1094014756 95.85 % 548490726 96.11 % 545524030 95.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20565253 1.80 % 10304410 1.81 % 10260843 1.80 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26821479 2.35 % 11905608 2.09 % 14915871 2.61 %
Bisulfite_reads C2T 582250800 51.01 % 291929190 51.15 % 290321610 50.87 %
Bisulfite_reads G2A 532329209 46.64 % 266865946 46.76 % 265463263 46.52 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 445637658
Average Unique 78.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41093108735 35.30 % 16432200397 28.23 % 24660908338 42.36 %
Base Counts Overall C 16190567821 13.91 % 915758970 1.57 % 15274808851 26.24 %
Base Counts Overall G 16541621810 14.21 % 15644683651 26.88 % 896938159 1.54 %
Base Counts Overall T 40982340592 35.20 % 24643253865 42.33 % 16339086727 28.07 %
Base Counts Overall N 1615312818 1.39 % 575579005 0.99 % 1039733813 1.79 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990921367699444
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 539408236



Mapping Quality

Mapping Quality Histogram
UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345061_14.mapq.png



Read Length

Read Length Reads
101 570700744
101 570700744



Insert Size Plot

Insert Size Histogram
UMCG00018.Bisulfite-Seq.DNA_Methylation.EGAX00001345061_14.isize.png