/EXTERNAL BLUEPRINT/methylation/K006390_K006403_24_lane_gembs
BACK
SAMPLE K006390_K006403_24_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26906933 |
24801851 |
92.18 % |
| NonRefCpG |
260891 |
197810 |
75.82 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6312371 |
11.88 % |
5690646 |
11.30 % |
53009 |
10.69 % |
31224 |
7.60 % |
| Intermediate (0.3-0.7) |
5886210 |
11.08 % |
5147667 |
10.22 % |
70599 |
14.23 % |
46159 |
11.23 % |
| Methylated (0.7-1) |
40918652 |
77.03 % |
39521005 |
78.48 % |
372374 |
75.08 % |
333495 |
81.17 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.910 |
|
0.920 |
|
0.900 |
|
0.920 |
|