/EXTERNAL BLUEPRINT/K006332_15_lane_gembs/S00FTN.Bisulfite-Seq.DNA_Methylation.EGAX00001236269_15

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SAMPLE K006332_15_lane_gembs LANE S00FTN.Bisulfite-Seq.DNA_Methylation.EGAX00001236269_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1239992562 100.00 % 619996281 100.00 % 619996281 100.00 %
General Reads 1205247915 97.20 % 604493237 97.50 % 600754678 96.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16930383 1.37 % 8483160 1.37 % 8447223 1.36 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17814264 1.44 % 7019884 1.13 % 10794380 1.74 %
Bisulfite_reads C2T 641639760 51.75 % 321805677 51.90 % 319834083 51.59 %
Bisulfite_reads G2A 580538538 46.82 % 291170720 46.96 % 289367818 46.67 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 489522628
Average Unique 78.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45616873248 36.07 % 17912389499 28.32 % 27704483749 43.81 %
Base Counts Overall C 16984194933 13.43 % 816604393 1.29 % 16167590540 25.57 %
Base Counts Overall G 17219909769 13.61 % 16422146420 25.97 % 797763349 1.26 %
Base Counts Overall T 45377594056 35.88 % 27465880581 43.43 % 17911713475 28.32 %
Base Counts Overall N 1280669318 1.01 % 622599769 0.98 % 658069549 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992655491319207
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 587090485



Mapping Quality

Mapping Quality Histogram
S00FTN.Bisulfite-Seq.DNA_Methylation.EGAX00001236269_15.mapq.png



Read Length

Read Length Reads
101 619996281
101 619996281



Insert Size Plot

Insert Size Histogram
S00FTN.Bisulfite-Seq.DNA_Methylation.EGAX00001236269_15.isize.png