/EXTERNAL BLUEPRINT/mapping_coverage/K006332_15_lane_gembs
BACK
SAMPLE K006332_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1189675209 |
100% |
103089335328 |
100% |
| Mapped |
1178540281 |
99.06 % |
101964707600 |
98.91 % |
| Passed |
941851131 |
79.17 % |
78059103450 |
75.72 % |
| NotPassed |
236689150 |
19.90 % |
23905604150 |
23.19 % |
| |
|
|
|
|
| LowMAPQ |
204052346 |
17.15 % |
20609286946 |
19.99 % |
| MateUnmapped |
11134928 |
0.94 % |
1124627728 |
1.09 % |
| Duplicate |
15636715 |
1.31 % |
1579308215 |
1.53 % |
| BadOrientation |
58 |
0.00 % |
5858 |
0.00 % |
| LargeInsertSize |
18760 |
0.00 % |
1894760 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16981271 |
1.43 % |
1715108371 |
1.66 % |
| Unmapped |
11134928 |
0.94 % |
1124627728 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
95121863024 |
100% |
| Passed |
73380771699 |
77.14 % |
| Trimmed |
3969780535 |
4.17 % |
| Clipped |
121785727 |
0.13 % |
| Overlapping |
16940973847 |
17.81 % |
| LowQuality |
708551216 |
0.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |