/EXTERNAL BLUEPRINT/methylation/K006332_15_lane_gembs

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SAMPLE K006332_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26662708 21086102 79.08 %
NonRefCpG 335940 159204 47.39 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006332_15_lane_gembs_coverage_refCpG.png ./IMG//K006332_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006332_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006332_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006332_15_lane_gembs_quality_refcpg.png ./IMG//K006332_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006332_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6105729 12.74 % 4592569 11.20 % 110257 19.24 % 31398 8.91 %
Intermediate (0.3-0.7) 7024633 14.66 % 4899139 11.94 % 123703 21.59 % 55938 15.88 %
Methylated (0.7-1) 34791265 72.60 % 31530631 76.86 % 339010 59.17 % 264868 75.20 %
Median Methylation 0.860 0.880 0.790 0.870