/EXTERNAL BLUEPRINT/methylation/K006285_14_lane_gembs

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SAMPLE K006285_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26694683 20515599 76.85 %
NonRefCpG 355899 156502 43.97 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006285_14_lane_gembs_coverage_refCpG.png ./IMG//K006285_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006285_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006285_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006285_14_lane_gembs_quality_refcpg.png ./IMG//K006285_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006285_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6034848 12.25 % 4341102 10.49 % 134853 21.31 % 33316 8.89 %
Intermediate (0.3-0.7) 8015405 16.27 % 5521609 13.35 % 142388 22.50 % 66545 17.76 %
Methylated (0.7-1) 35214214 71.48 % 31509348 76.16 % 355512 56.18 % 274924 73.36 %
Median Methylation 0.850 0.870 0.760 0.860