/EXTERNAL BLUEPRINT/mapping_coverage/K010490_K010491_2_lane_gembs
BACK
SAMPLE K010490_K010491_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1188831577 |
100% |
108059333724 |
100% |
| Mapped |
1171848970 |
98.57 % |
106344090417 |
98.41 % |
| Passed |
779722814 |
65.59 % |
66739348661 |
61.76 % |
| NotPassed |
392126156 |
32.98 % |
39604741756 |
36.65 % |
| |
|
|
|
|
| LowMAPQ |
321865500 |
27.07 % |
32508415500 |
30.08 % |
| MateUnmapped |
16982607 |
1.43 % |
1715243307 |
1.59 % |
| Duplicate |
28632803 |
2.41 % |
2891913103 |
2.68 % |
| BadOrientation |
120 |
0.00 % |
12120 |
0.00 % |
| LargeInsertSize |
226806 |
0.02 % |
22907406 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41400927 |
3.48 % |
4181493627 |
3.87 % |
| Unmapped |
16982607 |
1.43 % |
1715243307 |
1.59 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78692858715 |
100% |
| Passed |
62752480990 |
79.74 % |
| Trimmed |
3380167329 |
4.30 % |
| Clipped |
82857364 |
0.11 % |
| Overlapping |
11870652690 |
15.08 % |
| LowQuality |
606700342 |
0.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |