/EXTERNAL BLUEPRINT/methylation/K010490_K010491_2_lane_gembs
BACK
SAMPLE K010490_K010491_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25945926 |
15927415 |
61.39 % |
| NonRefCpG |
369230 |
107404 |
29.09 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5735163 |
13.29 % |
3331781 |
10.74 % |
122975 |
21.50 % |
22059 |
9.03 % |
| Intermediate (0.3-0.7) |
7801381 |
18.07 % |
3898502 |
12.57 % |
149000 |
26.05 % |
40402 |
16.53 % |
| Methylated (0.7-1) |
29628492 |
68.64 % |
23789229 |
76.69 % |
299920 |
52.44 % |
181906 |
74.44 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.890 |
|
0.720 |
|
0.880 |
|