/EXTERNAL BLUEPRINT/K006262_19_lane_gembs/C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001086970_19

BACK

SAMPLE K006262_19_lane_gembs LANE C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001086970_19

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2352469976 100.00 % 1176234988 100.00 % 1176234988 100.00 %
General Reads 2281836175 97.00 % 1144425069 97.30 % 1137411106 96.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24203731 1.03 % 12127056 1.03 % 12076675 1.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 46430070 1.97 % 19682863 1.67 % 26747207 2.27 %
Bisulfite_reads C2T 1207404281 51.32 % 605612818 51.49 % 601791463 51.16 %
Bisulfite_reads G2A 1098635625 46.70 % 550939307 46.84 % 547696318 46.56 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 922354457
Average Unique 78.42 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 87570938554 36.50 % 33902416028 28.26 % 53668522526 44.73 %
Base Counts Overall C 31129355789 12.97 % 1572759672 1.31 % 29556596117 24.64 %
Base Counts Overall G 31702430145 13.21 % 30217856927 25.19 % 1484573218 1.24 %
Base Counts Overall T 87059721273 36.28 % 53059964134 44.23 % 33999757139 28.34 %
Base Counts Overall N 2489491791 1.04 % 1222972015 1.02 % 1266519776 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.99837379115818
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1115385890



Mapping Quality

Mapping Quality Histogram
C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001086970_19.mapq.png



Read Length

Read Length Reads
101 1176234988
101 1176234988



Insert Size Plot

Insert Size Histogram
C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001086970_19.isize.png