/EXTERNAL BLUEPRINT/methylation/K006262_19_lane_gembs

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SAMPLE K006262_19_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27037435 23730166 87.77 %
NonRefCpG 295577 187108 63.30 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006262_19_lane_gembs_coverage_refCpG.png ./IMG//K006262_19_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006262_19_lane_gembs_coverage_nonRefCpG.png ./IMG//K006262_19_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006262_19_lane_gembs_quality_refcpg.png ./IMG//K006262_19_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006262_19_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6147676 12.07 % 5296158 11.34 % 67701 12.72 % 26161 6.63 %
Intermediate (0.3-0.7) 5531208 10.86 % 4402064 9.43 % 90339 16.97 % 48830 12.38 %
Methylated (0.7-1) 39270290 77.08 % 36997182 79.23 % 374166 70.30 % 319434 80.99 %
Median Methylation 0.890 0.890 0.860 0.890