/EXTERNAL BLUEPRINT/K006265_7_lane_gembs

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SAMPLE K006265_7_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2127261060 100.00 % 1063630530 100.00 % 1063630530 100.00 %
General Reads 2061008109 96.89 % 1033539018 97.17 % 1027469091 96.60 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23038849 1.08 % 11540548 1.09 % 11498301 1.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 43214102 2.03 % 18550964 1.74 % 24663138 2.32 %
Bisulfite_reads C2T 1100422277 51.73 % 551894781 51.89 % 548527496 51.57 %
Bisulfite_reads G2A 983624681 46.24 % 493184785 46.37 % 490439896 46.11 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 821863766
Average Unique 77.27 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75818804257 35.28 % 30206251788 28.11 % 45612552469 42.45 %
Base Counts Overall C 30395959674 14.14 % 1596090682 1.49 % 28799868992 26.80 %
Base Counts Overall G 30836366608 14.35 % 29259027331 27.23 % 1577339277 1.47 %
Base Counts Overall T 75617707452 35.18 % 45294482737 42.15 % 30323224715 28.22 %
Base Counts Overall N 2247120087 1.05 % 1102126501 1.03 % 1144993586 1.07 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9984403806323567
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1007760112



Mapping Quality

Mapping Quality Histogram
K006265_7_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006265_7_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C00184.Bisulfite-Seq.DNA_Methylation.EGAX00001097771_7