/EXTERNAL BLUEPRINT/mapping_coverage/K006265_7_lane_gembs
BACK
SAMPLE K006265_7_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2015931837 |
100% |
176280614214 |
100% |
| Mapped |
1995758508 |
99.00 % |
174262787033 |
98.86 % |
| Passed |
1549621727 |
76.87 % |
129637157560 |
73.54 % |
| NotPassed |
446136781 |
22.13 % |
44625629473 |
25.32 % |
| |
|
|
|
|
| LowMAPQ |
367709732 |
18.24 % |
36781796252 |
20.87 % |
| MateUnmapped |
20173329 |
1.00 % |
2017827181 |
1.14 % |
| Duplicate |
45126807 |
2.24 % |
4512854109 |
2.56 % |
| BadOrientation |
72 |
0.00 % |
7200 |
0.00 % |
| LargeInsertSize |
40350 |
0.00 % |
4036226 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
33259820 |
1.65 % |
3326935686 |
1.89 % |
| Unmapped |
20173329 |
1.00 % |
2017827181 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
155003402702 |
100% |
| Passed |
121270365895 |
78.24 % |
| Trimmed |
6608164495 |
4.26 % |
| Clipped |
209971978 |
0.14 % |
| Overlapping |
25156273164 |
16.23 % |
| LowQuality |
1758627170 |
1.13 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |