/EXTERNAL BLUEPRINT/methylation/K006265_7_lane_gembs

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SAMPLE K006265_7_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26721350 21064900 78.83 %
NonRefCpG 325451 165181 50.75 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006265_7_lane_gembs_coverage_refCpG.png ./IMG//K006265_7_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006265_7_lane_gembs_coverage_nonRefCpG.png ./IMG//K006265_7_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006265_7_lane_gembs_quality_refcpg.png ./IMG//K006265_7_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006265_7_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5965420 12.56 % 4636190 11.28 % 84820 15.54 % 25265 7.19 %
Intermediate (0.3-0.7) 5612867 11.81 % 3870386 9.42 % 106021 19.43 % 45799 13.04 %
Methylated (0.7-1) 35934618 75.63 % 32578896 79.30 % 354884 65.03 % 280154 79.77 %
Median Methylation 0.890 0.900 0.840 0.890