/EXTERNAL BLUEPRINT/K006260_19_lane_gembs/C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086968_19

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SAMPLE K006260_19_lane_gembs LANE C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086968_19

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1833339556 100.00 % 916669778 100.00 % 916669778 100.00 %
General Reads 1786753752 97.46 % 896077740 97.75 % 890676012 97.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11320789 0.62 % 5673575 0.62 % 5647214 0.62 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 35265015 1.92 % 14918463 1.63 % 20346552 2.22 %
Bisulfite_reads C2T 930551916 50.76 % 466690575 50.91 % 463861341 50.60 %
Bisulfite_reads G2A 867522625 47.32 % 435060740 47.46 % 432461885 47.18 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 737985379
Average Unique 80.51 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 69536637362 37.19 % 26766305297 28.63 % 42770332065 45.74 %
Base Counts Overall C 22846714316 12.22 % 1129811003 1.21 % 21716903313 23.23 %
Base Counts Overall G 23281342378 12.45 % 22235439120 23.78 % 1045903258 1.12 %
Base Counts Overall T 69378534131 37.10 % 42391938428 45.34 % 26986595703 28.86 %
Base Counts Overall N 1957406525 1.05 % 976823508 1.04 % 980583017 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9985455113864838
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 873012982



Mapping Quality

Mapping Quality Histogram
C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086968_19.mapq.png



Read Length

Read Length Reads
101 916669778
101 916669778



Insert Size Plot

Insert Size Histogram
C0010K.Bisulfite-Seq.DNA_Methylation.EGAX00001086968_19.isize.png