/EXTERNAL BLUEPRINT/K006290_14_lane_gembs

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SAMPLE K006290_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1141779722 100.00 % 570889861 100.00 % 570889861 100.00 %
General Reads 1075784806 94.22 % 539037984 94.42 % 536746822 94.02 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 21240145 1.86 % 10638471 1.86 % 10601674 1.86 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 44754771 3.92 % 21213406 3.72 % 23541365 4.12 %
Bisulfite_reads C2T 580006193 50.80 % 290766309 50.93 % 289239884 50.66 %
Bisulfite_reads G2A 517018758 45.28 % 258910146 45.35 % 258108612 45.21 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 408429161
Average Unique 71.54 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39528959623 33.94 % 16716292707 28.71 % 22812666916 39.18 %
Base Counts Overall C 18241576223 15.66 % 1140102751 1.96 % 17101473472 29.37 %
Base Counts Overall G 18260461240 15.68 % 17134074082 29.42 % 1126387158 1.93 %
Base Counts Overall T 39250899292 33.70 % 22660364102 38.91 % 16590535190 28.49 %
Base Counts Overall N 1179635266 1.01 % 579932180 1.00 % 599703086 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9984612694675575
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 521936081



Mapping Quality

Mapping Quality Histogram
K006290_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006290_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S004BT.Bisulfite-Seq.DNA_Methylation.EGAX00001147732_14