/EXTERNAL BLUEPRINT/mapping_coverage/K006290_14_lane_gembs
BACK
SAMPLE K006290_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1043568853 |
100% |
92608519221 |
100% |
| Mapped |
1030758933 |
98.77 % |
91314717301 |
98.60 % |
| Passed |
740601940 |
70.97 % |
62008861008 |
66.96 % |
| NotPassed |
290156993 |
27.80 % |
29305856293 |
31.64 % |
| |
|
|
|
|
| LowMAPQ |
229164850 |
21.96 % |
23145649850 |
24.99 % |
| MateUnmapped |
12809920 |
1.23 % |
1293801920 |
1.40 % |
| Duplicate |
32255059 |
3.09 % |
3257760959 |
3.52 % |
| BadOrientation |
44 |
0.00 % |
4444 |
0.00 % |
| LargeInsertSize |
71512 |
0.01 % |
7222712 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28665528 |
2.75 % |
2895218328 |
3.13 % |
| Unmapped |
12809920 |
1.23 % |
1293801920 |
1.40 % |
Base Level Counts
| Bases |
# |
% |
| Total |
74793698670 |
100% |
| Passed |
58204120354 |
77.82 % |
| Trimmed |
3074920176 |
4.11 % |
| Clipped |
71417763 |
0.10 % |
| Overlapping |
12713419899 |
17.00 % |
| LowQuality |
729820478 |
0.98 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |