/EXTERNAL BLUEPRINT/methylation/K006290_14_lane_gembs

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SAMPLE K006290_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25574476 15543405 60.78 %
NonRefCpG 332090 103072 31.04 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006290_14_lane_gembs_coverage_refCpG.png ./IMG//K006290_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006290_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006290_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006290_14_lane_gembs_quality_refcpg.png ./IMG//K006290_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006290_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5560368 13.44 % 3529576 11.97 % 99694 19.74 % 19800 8.86 %
Intermediate (0.3-0.7) 8168895 19.74 % 4107498 13.93 % 136865 27.10 % 40305 18.03 %
Methylated (0.7-1) 27652177 66.82 % 21849008 74.10 % 268462 53.16 % 163423 73.11 %
Median Methylation 0.820 0.860 0.720 0.850