/EXTERNAL BLUEPRINT/mapping_coverage/K006261_19_lane_gembs
BACK
SAMPLE K006261_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1823506150 |
100% |
162492366622 |
100% |
| Mapped |
1804295007 |
98.95 % |
160552041179 |
98.81 % |
| Passed |
1435501182 |
78.72 % |
123303864854 |
75.88 % |
| NotPassed |
368793825 |
20.22 % |
37248176325 |
22.92 % |
| |
|
|
|
|
| LowMAPQ |
286231528 |
15.70 % |
28909384328 |
17.79 % |
| MateUnmapped |
19211143 |
1.05 % |
1940325443 |
1.19 % |
| Duplicate |
52065654 |
2.86 % |
5258631054 |
3.24 % |
| BadOrientation |
24 |
0.00 % |
2424 |
0.00 % |
| LargeInsertSize |
18510 |
0.00 % |
1869510 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
30478109 |
1.67 % |
3078289009 |
1.89 % |
| Unmapped |
19211143 |
1.05 % |
1940325443 |
1.19 % |
Base Level Counts
| Bases |
# |
% |
| Total |
144979665028 |
100% |
| Passed |
114555120752 |
79.01 % |
| Trimmed |
6128117454 |
4.23 % |
| Clipped |
275520144 |
0.19 % |
| Overlapping |
21400280030 |
14.76 % |
| LowQuality |
2620626648 |
1.81 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |