/EXTERNAL BLUEPRINT/K006288_14_lane_gembs

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SAMPLE K006288_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1175086520 100.00 % 587543260 100.00 % 587543260 100.00 %
General Reads 1121673181 95.45 % 562466777 95.73 % 559206404 95.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15649152 1.33 % 7840484 1.33 % 7808668 1.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37764187 3.21 % 17235999 2.93 % 20528188 3.49 %
Bisulfite_reads C2T 596950459 50.80 % 299362275 50.95 % 297588184 50.65 %
Bisulfite_reads G2A 540371874 45.99 % 270944986 46.11 % 269426888 45.86 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 458685911
Average Unique 78.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 42703982922 35.63 % 16799706159 28.03 % 25904276763 43.22 %
Base Counts Overall C 16707110955 13.94 % 929234863 1.55 % 15777876092 26.33 %
Base Counts Overall G 16817895269 14.03 % 15932352961 26.59 % 885542308 1.48 %
Base Counts Overall T 42407100810 35.38 % 25675464205 42.84 % 16731636605 27.92 %
Base Counts Overall N 1222735084 1.02 % 592654332 0.99 % 630080752 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987194308279095
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 553135547



Mapping Quality

Mapping Quality Histogram
K006288_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006288_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S002S3.Bisulfite-Seq.DNA_Methylation.EGAX00001147730_14